PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G240300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 318aa    MW: 34752.2 Da    PI: 6.3994
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G240300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.31e-32281192102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++
  Sevir.5G240300.1.p  28 FVAKTYQMVCDPRTDALVRWGRENNSFVVVDPAGFSRLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTH 109
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +i r+k+
  Sevir.5G240300.1.p 110 LLPRIVRRKK 119
                         *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-5124117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.1E-3624117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.09E-3325117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-162851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-166678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-167991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDGLHTELAL GLLGCGGGGG DQLQTAPFVA KTYQMVCDPR TDALVRWGRE NNSFVVVDPA  60
GFSRLLLPCF FKHSNFSSFV RQLNTYGFRK VHPDRWEFAH ESFLRGQTHL LPRIVRRKKR  120
GEGGGGAASC SSVGEAQYAA ASCAIRGEDH QEGQDQEERE ALLEEVQRLR REQTAIGEEL  180
AQMSRRLQAT ERRPDQLMSF LARLAEDPDG VTRHLVEQAA EKKRRRMQLS SQAISPLPPP  240
LLALGGKDCD GWQWAEQKPA IVLPSFEPTS SYCAVQQVPD FGGGNGGGGG ITGMGLTADD  300
TAVEMPFPFC LLGQGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221311714129Heat shock factor protein 1
5d5v_B2e-221311714129Heat shock factor protein 1
5d5v_D2e-221311714129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-143AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969221.10.0PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-135HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLK3XK690.0K3XK69_SETIT; Uncharacterized protein
STRINGSi002292m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-57heat shock transcription factor C1